recipe bioconductor-autonomics

Generifying and intuifying cross-platform omics analysis

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/autonomics.html

License:

GPL-3

Recipe:

/bioconductor-autonomics/meta.yaml

This package offers a generic and intuitive solution for cross-platform omics data analysis. It has functions for import, preprocessing, exploration, contrast analysis and visualization of omics data. It follows a tidy, functional programming paradigm.

package bioconductor-autonomics

Versions:

1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocfilecache >=2.2.0,<2.3.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-multiassayexperiment >=1.20.0,<1.21.0

• bioconductor-pcamethods >=1.86.0,<1.87.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-abind

• r-assertive

• r-base >=4.1,<4.2.0a0

• r-colorspace

• r-data.table

• r-ggplot2

• r-ggrepel

• r-gridextra

• r-magrittr

• r-matrixstats

• r-r.utils

• r-rappdirs

• r-readxl

• r-rlang

• r-scales

• r-stringi

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-autonomics

and update with:

conda update bioconductor-autonomics

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-autonomics:<tag>

(see bioconductor-autonomics/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-autonomics/README.html)