- recipe bioconductor-ballgown
Flexible, isoform-level differential expression analysis
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/ballgown.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: ballgown, doi: 10.1038/nbt.3172
Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.
- package bioconductor-ballgown¶
-
- Versions:
2.30.0-0
,2.26.0-0
,2.24.0-0
,2.22.0-1
,2.22.0-0
,2.20.0-0
,2.18.0-0
,2.16.0-1
,2.14.0-0
,2.30.0-0
,2.26.0-0
,2.24.0-0
,2.22.0-1
,2.22.0-0
,2.20.0-0
,2.18.0-0
,2.16.0-1
,2.14.0-0
,2.12.0-0
,2.10.0-0
,2.8.4-0
,2.2.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-sva
>=3.46.0,<3.47.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-ballgown
and update with:
conda update bioconductor-ballgown
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ballgown:<tag>
(see bioconductor-ballgown/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ballgown/README.html)