recipe bioconductor-ballgown

Flexible, isoform-level differential expression analysis

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ballgown.html

License

Artistic-2.0

Recipe

/bioconductor-ballgown/meta.yaml

Links

biotools: ballgown, doi: 10.1038/nbt.3172

Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.

package bioconductor-ballgown

Versions

2.26.0-0,  2.24.0-0,  2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.16.0-1,  2.14.0-0,  2.12.0-0, 

2.26.0-0,  2.24.0-0,  2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.16.0-1,  2.14.0-0,  2.12.0-0,  2.10.0-0,  2.8.4-0,  2.2.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-sva >=3.42.0,<3.43.0

• r-base >=4.1,<4.2.0a0

• r-rcolorbrewer

Required By

• bioconductor-vasp

• bioconductor-rnaseqr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ballgown

and update with:

conda update bioconductor-ballgown

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ballgown:<tag>

(see bioconductor-ballgown/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ballgown/README.html)