recipe bioconductor-ballgown

Flexible, isoform-level differential expression analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ballgown.html

License:

Artistic-2.0

Recipe:

/bioconductor-ballgown/meta.yaml

Links:

biotools: ballgown, doi: 10.1038/nbt.3172

Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.

package bioconductor-ballgown

Versions:

2.30.0-0,  2.26.0-0,  2.24.0-0,  2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.16.0-1,  2.14.0-0, 

2.30.0-0,  2.26.0-0,  2.24.0-0,  2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.16.0-1,  2.14.0-0,  2.12.0-0,  2.10.0-0,  2.8.4-0,  2.2.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-sva >=3.46.0,<3.47.0

• r-base >=4.2,<4.3.0a0

• r-rcolorbrewer

Required By:

• bioconductor-rnaseqr

• bioconductor-vasp

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ballgown

and update with:

conda update bioconductor-ballgown

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ballgown:<tag>

(see bioconductor-ballgown/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ballgown/README.html)