- recipe bioconductor-bamsignals
Extract read count signals from bam files
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/bamsignals.html
- License
GPL-2
- Recipe
- Links
biotools: bamsignals, doi: 10.1038/nmeth.3252
This package allows to efficiently obtain count vectors from indexed bam files. It counts the number of reads in given genomic ranges and it computes reads profiles and coverage profiles. It also handles paired-end data.
- package bioconductor-bamsignals¶
-
- Versions
1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.14.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.14.0-0
,1.12.1-0
,1.10.0-0
- Depends
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rhtslib
>=1.26.0,<1.27.0
bioconductor-zlibbioc
>=1.40.0,<1.41.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
r-rcpp
>=0.10.6
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-bamsignals
and update with:
conda update bioconductor-bamsignals
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bamsignals:<tag>
(see bioconductor-bamsignals/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bamsignals/README.html)