recipe bioconductor-bandits

BANDITS is a Bayesian hierarchical model for detecting differential splicing of genes and transcripts, via differential transcript usage (DTU), between two or more conditions. The method uses a Bayesian hierarchical framework, which allows for sample specific proportions in a Dirichlet-Multinomial model, and samples the allocation of fragments to the transcripts. Parameters are inferred via Markov chain Monte Carlo (MCMC) techniques and a DTU test is performed via a multivariate Wald test on the posterior densities for the average relative abundance of transcripts.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/BANDITS.html

License

GPL (>= 3)

Recipe

/bioconductor-bandits/meta.yaml

package bioconductor-bandits

(downloads) docker_bioconductor-bandits

Versions

1.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bandits

and update with:

conda update bioconductor-bandits

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bandits:<tag>

(see bioconductor-bandits/tags for valid values for <tag>)