recipe bioconductor-basicstarrseq

Basic peak calling on STARR-seq data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/BasicSTARRseq.html

License:

LGPL-3

Recipe:

/bioconductor-basicstarrseq/meta.yaml

Basic peak calling on STARR-seq data based on a method introduced in "Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq" Arnold et al. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013 Jan 17.

package bioconductor-basicstarrseq

Versions:

1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-1, 

1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-1,  1.10.0-0

Depends:

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-basicstarrseq

and update with:

conda update bioconductor-basicstarrseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-basicstarrseq:<tag>

(see bioconductor-basicstarrseq/tags for valid values for <tag>)

Download stats

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