recipe bioconductor-bayesspace

Clustering and Resolution Enhancement of Spatial Transcriptomes

Homepage

https://bioconductor.org/packages/3.14/bioc/html/BayesSpace.html

License

MIT + file LICENSE

Recipe

/bioconductor-bayesspace/meta.yaml

Tools for clustering and enhancing the resolution of spatial gene expression experiments. BayesSpace clusters a low-dimensional representation of the gene expression matrix, incorporating a spatial prior to encourage neighboring spots to cluster together. The method can enhance the resolution of the low-dimensional representation into "sub-spots", for which features such as gene expression or cell type composition can be imputed.

package bioconductor-bayesspace

(downloads) docker_bioconductor-bayesspace

Versions

1.4.0-01.2.0-01.0.0-11.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bayesspace

and update with:

conda update bioconductor-bayesspace

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bayesspace:<tag>

(see bioconductor-bayesspace/tags for valid values for <tag>)

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