recipe bioconductor-baynorm

Single-cell RNA sequencing data normalization

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/bayNorm.html

License:

GPL (>= 2)

Recipe:

/bioconductor-baynorm/meta.yaml

bayNorm is used for normalizing single-cell RNA-seq data.

package bioconductor-baynorm

Versions:

1.16.0-0,  1.12.0-2,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0, 

1.16.0-0,  1.12.0-2,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.6-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-bb

• r-dosnow

• r-fitdistrplus

• r-foreach

• r-iterators

• r-locfit

• r-mass

• r-matrix

• r-rcpp >=0.12.12

• r-rcpparmadillo

• r-rcppprogress

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-baynorm

and update with:

conda update bioconductor-baynorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-baynorm:<tag>

(see bioconductor-baynorm/tags for valid values for <tag>)

Download stats

Link to this page

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