recipe bioconductor-baynorm

Single-cell RNA sequencing data normalization

Homepage

https://bioconductor.org/packages/3.11/bioc/html/bayNorm.html

License

GPL (>= 2)

Recipe

/bioconductor-baynorm/meta.yaml

bayNorm is used for normalizing single-cell RNA-seq data.

package bioconductor-baynorm

Versions

1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.6-0

Depends

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-singlecellexperiment >=1.10.0,<1.11.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.3.0

• r-base >=4.0,<4.1.0a0

• r-bb

• r-dosnow

• r-fitdistrplus

• r-foreach

• r-iterators

• r-locfit

• r-mass

• r-matrix

• r-rcpp >=0.12.12

• r-rcpparmadillo

• r-rcppprogress

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-baynorm

and update with:

conda update bioconductor-baynorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-baynorm:<tag>

(see bioconductor-baynorm/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-baynorm/README.html)