recipe bioconductor-baynorm

Single-cell RNA sequencing data normalization

Homepage

https://bioconductor.org/packages/3.14/bioc/html/bayNorm.html

License

GPL (>= 2)

Recipe

/bioconductor-baynorm/meta.yaml

bayNorm is used for normalizing single-cell RNA-seq data.

package bioconductor-baynorm

Versions

1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.6-0

Depends

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=10.3.0

• r-base >=4.1,<4.2.0a0

• r-bb

• r-dosnow

• r-fitdistrplus

• r-foreach

• r-iterators

• r-locfit

• r-mass

• r-matrix

• r-rcpp >=0.12.12

• r-rcpparmadillo

• r-rcppprogress

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-baynorm

and update with:

conda update bioconductor-baynorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-baynorm:<tag>

(see bioconductor-baynorm/tags for valid values for <tag>)

Download stats

Link to this page

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