recipe bioconductor-bcseq

This Rcpp-based package implements a highly efficient data structure and algorithm for performing alignment of short reads from CRISPR or shRNA screens to reference barcode library. Sequencing error are considered and matching qualities are evaluated based on Phred scores. A Bayes’ classifier is employed to predict the originating barcode of a read. The package supports provision of user-defined probability models for evaluating matching qualities. The package also supports multi-threading.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/bcSeq.html

License

GPL (>= 2)

Recipe

/bioconductor-bcseq/meta.yaml

package bioconductor-bcseq

(downloads) docker_bioconductor-bcseq

Versions

1.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bcseq

and update with:

conda update bioconductor-bcseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bcseq:<tag>

(see bioconductor-bcseq/tags for valid values for <tag>)