recipe bioconductor-beachmat

Compiling Bioconductor to Handle Each Matrix Type

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/beachmat.html

License:

GPL-3

Recipe:

/bioconductor-beachmat/meta.yaml

Provides a consistent C++ class interface for reading from and writing data to a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, third-party S4 classes may be supported by external linkage, while all other matrices are handled by DelayedArray block processing.

package bioconductor-beachmat

versions:

2.16.0-0,  2.14.0-1,  2.14.0-0,  2.10.0-2,  2.10.0-1,  2.10.0-0,  2.8.0-0,  2.6.4-1,  2.6.0-0, 

2.16.0-0,  2.14.0-1,  2.14.0-0,  2.10.0-2,  2.10.0-1,  2.10.0-0,  2.8.0-0,  2.6.4-1,  2.6.0-0,  2.4.0-0,  2.2.0-0,  2.0.0-1,  1.4.0-1,  1.4.0-0,  1.2.1-0,  1.0.1-0

depends bioconductor-biocgenerics:

>=0.46.0,<0.47.0

depends bioconductor-delayedarray:

>=0.26.0,<0.27.0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

depends r-base:

>=4.3,<4.4.0a0

depends r-matrix:

depends r-rcpp:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-beachmat

and update with::

   mamba update bioconductor-beachmat

To create a new environment, run:

mamba create --name myenvname bioconductor-beachmat

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-beachmat:<tag>

(see `bioconductor-beachmat/tags`_ for valid values for ``<tag>``)

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