recipe bioconductor-beachmat

Provides a consistent C++ class interface for a variety of commonly used matrix types, including sparse and HDF5-backed matrices.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/beachmat.html

License

GPL-3

Recipe

/bioconductor-beachmat/meta.yaml

package bioconductor-beachmat

Versions

1.4.0-1, 1.4.0-0, 1.2.1-0, 1.0.1-0

Depends

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-delayedarray >=0.8.0,<0.9.0

• bioconductor-hdf5array >=1.10.0,<1.11.0

• bioconductor-rhdf5 >=2.26.0,<2.27.0

• bioconductor-rhdf5lib >=1.4.0,<1.5.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-rcpp >=0.12.14

Required By

• bioconductor-bsseq

• bioconductor-scater

• bioconductor-scran

• bioconductor-dropletutils

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-beachmat

and update with:

conda update bioconductor-beachmat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-beachmat:<tag>

(see bioconductor-beachmat/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-beachmat/README.html)