recipe bioconductor-beachmat

Provides a consistent C++ class interface for reading from and writing data to a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, third-party S4 classes may be supported by external linkage, while all other matrices are handled by DelayedArray block processing.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/beachmat.html

License

GPL-3

Recipe

/bioconductor-beachmat/meta.yaml

package bioconductor-beachmat

(downloads) docker_bioconductor-beachmat

Versions

1.4.0-1, 1.4.0-0, 1.2.1-0, 1.0.1-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-delayedarray

>=0.8.0,<0.9.0

Depends bioconductor-hdf5array

>=1.10.0,<1.11.0

Depends bioconductor-rhdf5

>=2.26.0,<2.27.0

Depends bioconductor-rhdf5lib

>=1.4.0,<1.5.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-rcpp

>=0.12.14

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-beachmat

and update with:

conda update bioconductor-beachmat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-beachmat:<tag>

(see bioconductor-beachmat/tags for valid values for <tag>)