recipe bioconductor-beachmat

Compiling Bioconductor to Handle Each Matrix Type

Homepage

https://bioconductor.org/packages/3.11/bioc/html/beachmat.html

License

GPL-3

Recipe

/bioconductor-beachmat/meta.yaml

Provides a consistent C++ class interface for reading from and writing data to a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, third-party S4 classes may be supported by external linkage, while all other matrices are handled by DelayedArray block processing.

package bioconductor-beachmat

Versions

2.4.0-0, 2.2.0-0, 2.0.0-1, 1.4.0-1, 1.4.0-0, 1.2.1-0, 1.0.1-0

Depends

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-delayedarray >=0.14.0,<0.15.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.3.0

• r-base >=4.0,<4.1.0a0

• r-matrix

Required By

• bioconductor-bsseq

• bioconductor-pcatools

• bioconductor-biocsingular

• bioconductor-scater

• bioconductor-glmgampoi

• bioconductor-mbkmeans

• bioconductor-singler

• bioconductor-batchelor

• bioconductor-scran

• bioconductor-dropletutils

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-beachmat

and update with:

conda update bioconductor-beachmat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-beachmat:<tag>

(see bioconductor-beachmat/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-beachmat/README.html)