recipe bioconductor-beachmat

Compiling Bioconductor to Handle Each Matrix Type

Homepage

https://bioconductor.org/packages/3.13/bioc/html/beachmat.html

License

GPL-3

Recipe

/bioconductor-beachmat/meta.yaml

Provides a consistent C++ class interface for reading from and writing data to a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, third-party S4 classes may be supported by external linkage, while all other matrices are handled by DelayedArray block processing.

package bioconductor-beachmat

Versions

2.8.0-0,  2.6.4-1,  2.6.0-0,  2.4.0-0,  2.2.0-0,  2.0.0-1,  1.4.0-1,  1.4.0-0,  1.2.1-0, 

2.8.0-0,  2.6.4-1,  2.6.0-0,  2.4.0-0,  2.2.0-0,  2.0.0-1,  1.4.0-1,  1.4.0-0,  1.2.1-0,  1.0.1-0

Depends

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-delayedarray >=0.18.0,<0.19.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=9.3.0

• r-base >=4.1,<4.2.0a0

• r-matrix

• r-rcpp

Required By

• bioconductor-scuttle

• bioconductor-scater

• bioconductor-mbkmeans

• bioconductor-bsseq

• bioconductor-dropletutils

• bioconductor-pcatools

• bioconductor-mumosa

• bioconductor-biocsingular

• bioconductor-batchelor

• bioconductor-scran

• bioconductor-glmgampoi

• bioconductor-singler

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-beachmat

and update with:

conda update bioconductor-beachmat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-beachmat:<tag>

(see bioconductor-beachmat/tags for valid values for <tag>)

Download stats

Link to this page

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