- recipe bioconductor-beadsorted.saliva.epic
Illumina EPIC data on BeadSorted child saliva cells
Raw data objects used to estimate saliva cell proportion estimates in ewastools. The FlowSorted.Saliva.EPIC object is constructed from samples assayed by Lauren Middleton et. al. (2021).
- package bioconductor-beadsorted.saliva.epic¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-beadsorted.saliva.epic and update with:: mamba update bioconductor-beadsorted.saliva.epic
To create a new environment, run:
mamba create --name myenvname bioconductor-beadsorted.saliva.epic
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-beadsorted.saliva.epic:<tag> (see `bioconductor-beadsorted.saliva.epic/tags`_ for valid values for ``<tag>``)