recipe bioconductor-beadsorted.saliva.epic

Illumina EPIC data on BeadSorted child saliva cells

Homepage:

https://bioconductor.org/packages/3.17/data/experiment/html/BeadSorted.Saliva.EPIC.html

License:

GPL-3

Recipe:

/bioconductor-beadsorted.saliva.epic/meta.yaml

Raw data objects used to estimate saliva cell proportion estimates in ewastools. The FlowSorted.Saliva.EPIC object is constructed from samples assayed by Lauren Middleton et. al. (2021).

package bioconductor-beadsorted.saliva.epic

(downloads) docker_bioconductor-beadsorted.saliva.epic

versions:

1.8.0-0,  1.6.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

depends bioconductor-data-packages:

>=20230706

depends bioconductor-experimenthub:

>=2.8.0,<2.9.0

depends bioconductor-minfi:

>=1.46.0,<1.47.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-beadsorted.saliva.epic

and update with::

   mamba update bioconductor-beadsorted.saliva.epic

To create a new environment, run:

mamba create --name myenvname bioconductor-beadsorted.saliva.epic

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-beadsorted.saliva.epic:<tag>

(see `bioconductor-beadsorted.saliva.epic/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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