recipe bioconductor-bearscc

BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters)

Homepage

https://bioconductor.org/packages/3.14/bioc/html/BEARscc.html

License

GPL-3

Recipe

/bioconductor-bearscc/meta.yaml

BEARscc is a noise estimation and injection tool that is designed to assess putative single-cell RNA-seq clusters in the context of experimental noise estimated by ERCC spike-in controls.

package bioconductor-bearscc

Versions

1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.7.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-ggplot2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bearscc

and update with:

conda update bioconductor-bearscc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bearscc:<tag>

(see bioconductor-bearscc/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bearscc/README.html)