recipe bioconductor-bgeecall

Automatic RNA-Seq present/absent gene expression calls generation

Homepage

https://bioconductor.org/packages/3.11/bioc/html/BgeeCall.html

License

GPL-3

Recipe

/bioconductor-bgeecall/meta.yaml

Reference intergenic regions are generated by the Bgee RNA-Seq pipeline. These intergenic regions are used to generate all Bgee RNA-Seq present/absent expression calls. BgeeCall now allows to generate present/absent calls for any RNA-Seq library as long as reference intergenic sequences have been generated for the corresponding species. The threshold of present/absent expression is no longer arbitrary defined but is calculated based on expression of all RNA-Seq libraries integrated in Bgee.

package bioconductor-bgeecall

(downloads) docker_bioconductor-bgeecall

Versions

1.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bgeecall

and update with:

conda update bioconductor-bgeecall

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bgeecall:<tag>

(see bioconductor-bgeecall/tags for valid values for <tag>)