recipe bioconductor-bifet

Bias-free Footprint Enrichment Test

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/BiFET.html

License:

GPL-3

Recipe:

/bioconductor-bifet/meta.yaml

BiFET identifies TFs whose footprints are over-represented in target regions compared to background regions after correcting for the bias arising from the imbalance in read counts and GC contents between the target and background regions. For a given TF k, BiFET tests the null hypothesis that the target regions have the same probability of having footprints for the TF k as the background regions while correcting for the read count and GC content bias. For this, we use the number of target regions with footprints for TF k, t_k as a test statistic and calculate the p-value as the probability of observing t_k or more target regions with footprints under the null hypothesis.

package bioconductor-bifet

Versions:

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends:

• bioconductor-genomicranges >=1.50.0,<1.51.0

• r-base >=4.2,<4.3.0a0

• r-poibin

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bifet

and update with:

conda update bioconductor-bifet

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bifet:<tag>

(see bioconductor-bifet/tags for valid values for <tag>)

Download stats

Link to this page

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