recipe bioconductor-biggr

Constraint based modeling in R using metabolic reconstruction databases

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/BiGGR.html

License:

file LICENSE

Recipe:

/bioconductor-biggr/meta.yaml

This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package facilitates flux balance analysis (FBA) and the sampling of feasible flux distributions. Metabolic networks and estimated fluxes can be visualized with hypergraphs.

package bioconductor-biggr

Versions:

1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0

Depends:

• bioconductor-hyperdraw >=1.46.0,<1.47.0

• bioconductor-hypergraph >=1.66.0,<1.67.0

• bioconductor-rsbml >=2.52.0,<2.53.0

• r-base >=4.1,<4.2.0a0

• r-lim

• r-limsolve

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-biggr

and update with:

conda update bioconductor-biggr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biggr:<tag>

(see bioconductor-biggr/tags for valid values for <tag>)

Download stats

Link to this page

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