- recipe bioconductor-biocfhir
Illustration of FHIR ingestion and transformation using R
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/BiocFHIR.html
- License:
Artistic-2.0
- Recipe:
FHIR R4 bundles in JSON format are derived from https://synthea.mitre.org/downloads. Transformation inspired by a kaggle notebook published by Dr Alexander Scarlat, https://www.kaggle.com/code/drscarlat/fhir-starter-parse-healthcare-bundles-into-tables. This is a very limited illustration of some basic parsing and reorganization processes. Additional tooling will be required to move beyond the Synthea data illustrations.
- package bioconductor-biocfhir¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-biocbaseutils
>=1.0.0,<1.1.0
bioconductor-graph
>=1.76.0,<1.77.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-biocfhir
and update with:
conda update bioconductor-biocfhir
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-biocfhir:<tag>
(see bioconductor-biocfhir/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-biocfhir/README.html)