recipe bioconductor-biocfhir

Illustration of FHIR ingestion and transformation using R

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/BiocFHIR.html

License:

Artistic-2.0

Recipe:

/bioconductor-biocfhir/meta.yaml

FHIR R4 bundles in JSON format are derived from https://synthea.mitre.org/downloads. Transformation inspired by a kaggle notebook published by Dr Alexander Scarlat, https://www.kaggle.com/code/drscarlat/fhir-starter-parse-healthcare-bundles-into-tables. This is a very limited illustration of some basic parsing and reorganization processes. Additional tooling will be required to move beyond the Synthea data illustrations.

package bioconductor-biocfhir

(downloads) docker_bioconductor-biocfhir

Versions:

1.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-biocfhir

and update with:

conda update bioconductor-biocfhir

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biocfhir:<tag>

(see bioconductor-biocfhir/tags for valid values for <tag>)

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