Package Recipe 'bioconductor-biocfhir'

recipe bioconductor-biocfhir

Illustration of FHIR ingestion and transformation using R

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/BiocFHIR.html
License:: Artistic-2.0
Recipe:: /bioconductor-biocfhir/meta.yaml

FHIR R4 bundles in JSON format are derived from https://synthea.mitre.org/downloads. Transformation inspired by a kaggle notebook published by Dr Alexander Scarlat, https://www.kaggle.com/code/drscarlat/fhir-starter-parse-healthcare-bundles-into-tables. This is a very limited illustration of some basic parsing and reorganization processes. Additional tooling will be required to move beyond the Synthea data illustrations.

package bioconductor-biocfhir¶

Versions:

1.0.0-0

Depends:

bioconductor-biocbaseutils >=1.0.0,<1.1.0
bioconductor-graph >=1.76.0,<1.77.0
r-base >=4.2,<4.3.0a0
r-dt
r-igraph
r-jsonlite
r-shiny
r-tidyr
r-visnetwork

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-biocfhir

and update with:

conda update bioconductor-biocfhir

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biocfhir:<tag>

(see bioconductor-biocfhir/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biocfhir/README.html)