- recipe bioconductor-biocio
Standard Input and Output for Bioconductor Packages
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/BiocIO.html
- License:
Artistic-2.0
- Recipe:
The `BiocIO` package contains high-level abstract classes and generics used by developers to build IO funcionality within the Bioconductor suite of packages. Implements `import()` and `export()` standard generics for importing and exporting biological data formats. `import()` supports whole-file as well as chunk-wise iterative import. The `import()` interface optionally provides a standard mechanism for 'lazy' access via `filter()` (on row or element-like components of the file resource), `select()` (on column-like components of the file resource) and `collect()`. The `import()` interface optionally provides transparent access to remote (e.g. via https) as well as local access. Developers can register a file extension, e.g., `.loom` for dispatch from character-based URIs to specific `import()` / `export()` methods based on classes representing file types, e.g., `LoomFile()`.
- package bioconductor-biocio¶
-
- Versions:
1.8.0-0
,1.4.0-0
,1.2.0-0
,1.0.1-0
,1.0.0-1
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-biocio
and update with:
conda update bioconductor-biocio
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-biocio:<tag>
(see bioconductor-biocio/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-biocio/README.html)