recipe bioconductor-biocio

Standard Input and Output for Bioconductor Packages

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/BiocIO.html

License:

Artistic-2.0

Recipe:

/bioconductor-biocio/meta.yaml

The `BiocIO` package contains high-level abstract classes and generics used by developers to build IO funcionality within the Bioconductor suite of packages. Implements `import()` and `export()` standard generics for importing and exporting biological data formats. `import()` supports whole-file as well as chunk-wise iterative import. The `import()` interface optionally provides a standard mechanism for 'lazy' access via `filter()` (on row or element-like components of the file resource), `select()` (on column-like components of the file resource) and `collect()`. The `import()` interface optionally provides transparent access to remote (e.g. via https) as well as local access. Developers can register a file extension, e.g., `.loom` for dispatch from character-based URIs to specific `import()` / `export()` methods based on classes representing file types, e.g., `LoomFile()`.

package bioconductor-biocio

Versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.1-0,  1.0.0-1

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-tenxio

• r-pipette

• bioconductor-helloranges

• r-acidsinglecell

• bioconductor-biocset

• bioconductor-rtracklayer

• r-basejump

• bioconductor-genomicfeatures

• bioconductor-extrachips

• bioconductor-loomexperiment

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-biocio

and update with:

conda update bioconductor-biocio

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biocio:<tag>

(see bioconductor-biocio/tags for valid values for <tag>)

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Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biocio/README.html)