recipe bioconductor-bioconcotk

Bioconductor components for general cancer genomics

Homepage

https://bioconductor.org/packages/3.11/bioc/html/BiocOncoTK.html

License

Artistic-2.0

Recipe

/bioconductor-bioconcotk/meta.yaml

Provide a central interface to various tools for genome-scale analysis of cancer studies.

package bioconductor-bioconcotk

Versions

1.8.0-0,  1.6.0-1,  1.4.0-1,  1.2.0-0

Depends

• bioconductor-complexheatmap >=2.4.0,<2.5.0

• bioconductor-curatedtcgadata >=1.10.0,<1.11.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-graph >=1.66.0,<1.67.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rgraphviz >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-bigrquery

• r-car

• r-dbi

• r-dplyr

• r-dt

• r-ggplot2

• r-ggpubr

• r-httr

• r-magrittr

• r-plyr

• r-rjson

• r-scales

• r-shiny

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bioconcotk

and update with:

conda update bioconductor-bioconcotk

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bioconcotk:<tag>

(see bioconductor-bioconcotk/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bioconcotk/README.html)