recipe bioconductor-biocroxytest

Handle Long Tests in Bioconductor Packages

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/biocroxytest.html

License:

GPL (>= 3)

Recipe:

/bioconductor-biocroxytest/meta.yaml

This package provides a roclet for roxygen2 that identifies and processes code blocks in your documentation marked with `@longtests`. These blocks should contain tests that take a long time to run and thus cannot be included in the regular test suite of the package. When you run `roxygen2::roxygenise` with the `longtests_roclet`, it will extract these long tests from your documentation and save them in a separate directory. This allows you to run these long tests separately from the rest of your tests, for example, on a continuous integration server that is set up to run long tests.

package bioconductor-biocroxytest

(downloads) docker_bioconductor-biocroxytest

versions:

1.2.0-0

depends r-base:

>=4.4,<4.5.0a0

depends r-cli:

depends r-glue:

depends r-roxygen2:

depends r-stringr:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biocroxytest

and update with::

   mamba update bioconductor-biocroxytest

To create a new environment, run:

mamba create --name myenvname bioconductor-biocroxytest

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-biocroxytest:<tag>

(see `bioconductor-biocroxytest/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biocroxytest/README.html)