recipe bioconductor-biocsingular

Singular Value Decomposition for Bioconductor Packages

Homepage

https://bioconductor.org/packages/3.14/bioc/html/BiocSingular.html

License

GPL-3

Recipe

/bioconductor-biocsingular/meta.yaml

Implements exact and approximate methods for singular value decomposition and principal components analysis, in a framework that allows them to be easily switched within Bioconductor packages or workflows. Where possible, parallelization is achieved using the BiocParallel framework.

package bioconductor-biocsingular

Versions

1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends

• bioconductor-beachmat >=2.10.0,<2.11.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-delayedarray >=0.20.0,<0.21.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-scaledmatrix >=1.2.0,<1.3.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=10.3.0

• r-base >=4.1,<4.2.0a0

• r-irlba

• r-matrix

• r-rcpp

• r-rsvd

Required By

• bioconductor-scdblfinder

• bioconductor-delayedtensor

• bioconductor-scater

• bioconductor-milor

• bioconductor-bayesspace

• bioconductor-scran

• bioconductor-batchelor

• bioconductor-newwave

• bioconductor-dino

• bioconductor-nanomethviz

• bioconductor-mumosa

• bioconductor-pcatools

• bioconductor-clusterexperiment

• bioconductor-compartmap

• bioconductor-singler

• bioconductor-scmerge

• bioconductor-velociraptor

• bioconductor-gsva

• bioconductor-scry

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-biocsingular

and update with:

conda update bioconductor-biocsingular

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biocsingular:<tag>

(see bioconductor-biocsingular/tags for valid values for <tag>)

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