recipe bioconductor-biocthis

Automate package and project setup for Bioconductor packages






This package expands the usethis package with the goal of helping automate the process of creating R packages for Bioconductor or making them Bioconductor-friendly.

package bioconductor-biocthis

(downloads) docker_bioconductor-biocthis



depends r-base:


depends r-biocmanager:

depends r-fs:

depends r-glue:

depends r-rlang:

depends r-styler:

depends r-usethis:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biocthis

and update with::

   mamba update bioconductor-biocthis

To create a new environment, run:

mamba create --name myenvname bioconductor-biocthis

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-biocthis/tags`_ for valid values for ``<tag>``)

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