recipe bioconductor-biodb

biodb, a library and a development framework for connecting to chemical and biological databases

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/biodb.html

License:

AGPL-3

Recipe:

/bioconductor-biodb/meta.yaml

The biodb package provides access to standard remote chemical and biological databases (ChEBI, KEGG, HMDB, …), as well as to in-house local database files (CSV, SQLite), with easy retrieval of entries, access to web services, search of compounds by mass and/or name, and mass spectra matching for LCMS and MSMS. Its architecture as a development framework facilitates the development of new database connectors for local projects or inside separate published packages.

package bioconductor-biodb

(downloads) docker_bioconductor-biodb

Versions:

1.2.2-01.2.0-01.0.3-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-biodb

and update with:

conda update bioconductor-biodb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biodb:<tag>

(see bioconductor-biodb/tags for valid values for <tag>)

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