recipe bioconductor-biodbkegg

biodbKegg, a library for connecting to the KEGG Database






The biodbKegg library is an extension of the biodb framework package that provides access to the KEGG databases Compound, Enzyme, Genes, Module, Orthology and Reaction. It allows to retrieve entries by their accession numbers. Web services like "find", "list" and "findExactMass" are also available. Some functions for navigating along the pathways have also been implemented.

package bioconductor-biodbkegg

(downloads) docker_bioconductor-biodbkegg



depends bioconductor-biodb:


depends r-base:


depends r-chk:

depends r-lifecycle:

depends r-r6:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biodbkegg

and update with::

   mamba update bioconductor-biodbkegg

To create a new environment, run:

mamba create --name myenvname bioconductor-biodbkegg

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-biodbkegg/tags`_ for valid values for ``<tag>``)

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