recipe bioconductor-biodbmirbase

biodbMirbase, a library for connecting to miRBase mature database






The biodbMirbase library is an extension of the biodb framework package, that provides access to miRBase mature database. It allows to retrieve entries by their accession number, and run specific web services. Description: The biodbMirbase library provides access to the miRBase Database, using biodb package framework.

package bioconductor-biodbmirbase

(downloads) docker_bioconductor-biodbmirbase



depends bioconductor-biodb:


depends r-base:


depends r-chk:

depends r-r6:

depends r-stringr:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biodbmirbase

and update with::

   mamba update bioconductor-biodbmirbase

To create a new environment, run:

mamba create --name myenvname bioconductor-biodbmirbase

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-biodbmirbase/tags`_ for valid values for ``<tag>``)

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