- recipe bioconductor-biomvrcns
Copy Number study and Segmentation for multivariate biological data
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/biomvRCNS.html
- License:
GPL (>= 2)
- Recipe:
In this package, a Hidden Semi Markov Model (HSMM) and one homogeneous segmentation model are designed and implemented for segmentation genomic data, with the aim of assisting in transcripts detection using high throughput technology like RNA-seq or tiling array, and copy number analysis using aCGH or sequencing.
- package bioconductor-biomvrcns¶
-
- Versions:
1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.22.0-0
- Depends:
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-gviz
>=1.38.0,<1.39.0
bioconductor-iranges
>=2.28.0,<2.29.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-biomvrcns
and update with:
conda update bioconductor-biomvrcns
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-biomvrcns:<tag>
(see bioconductor-biomvrcns/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-biomvrcns/README.html)