bioconductor-bionet

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This package provides functions for the integrated analysis of protein-protein interaction networks and the detection of functional modules. Different datasets can be integrated into the network by assigning p-values of statistical tests to the nodes of the network. E.g. p-values obtained from the differential expression of the genes from an Affymetrix array are assigned to the nodes of the network. By fitting a beta-uniform mixture model and calculating scores from the p-values, overall scores of network regions can be calculated and an integer linear programming algorithm identifies the maximum scoring subnetwork.

Home http://bioconductor.org/packages/release/bioc/html/BioNet.html
Versions 1.34.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-bionet

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bionet

and update with:

conda update bioconductor-bionet

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-bionet.