# bioconductor-bionet¶

This package provides functions for the integrated analysis of protein-protein interaction networks and the detection of functional modules. Different datasets can be integrated into the network by assigning p-values of statistical tests to the nodes of the network. E.g. p-values obtained from the differential expression of the genes from an Affymetrix array are assigned to the nodes of the network. By fitting a beta-uniform mixture model and calculating scores from the p-values, overall scores of network regions can be calculated and an integer linear programming algorithm identifies the maximum scoring subnetwork.

 Home http://bioconductor.org/packages/3.6/bioc/html/BioNet.html Versions 1.34.0, 1.36.0, 1.38.0 License GPL (>= 2) Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-bionet

## Installation¶

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bionet


and update with:

conda update bioconductor-bionet


A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-bionet.