recipe bioconductor-bladderbatch

Bladder gene expression data illustrating batch effects

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/bladderbatch.html

License

Artistic-2.0

Recipe

/bioconductor-bladderbatch/meta.yaml

This package contains microarray gene expression data on 57 bladder samples from 5 batches. The data are used as an illustrative example for the sva package.

package bioconductor-bladderbatch

Versions

1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-0,  1.18.0-0, 

1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-0,  1.18.0-0,  1.14.0-1,  1.14.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-ruvcorr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bladderbatch

and update with:

conda update bioconductor-bladderbatch

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bladderbatch:<tag>

(see bioconductor-bladderbatch/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bladderbatch/README.html)