recipe bioconductor-bloodcancermultiomics2017

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/BloodCancerMultiOmics2017.html

License

LGPL (>= 3)

Recipe

/bioconductor-bloodcancermultiomics2017/meta.yaml

The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.

package bioconductor-bloodcancermultiomics2017

Versions

1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-deseq2 >=1.28.0,<1.29.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• curl >=7.69.1,<8.0a0

• r-base >=4.0,<4.1.0a0

• r-beeswarm

• r-devtools

• r-dplyr

• r-ggdendro

• r-ggplot2

• r-glmnet

• r-gtable

• r-ipflasso

• r-rcolorbrewer

• r-reshape2

• r-scales

• r-survival

• r-tibble

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bloodcancermultiomics2017

and update with:

conda update bioconductor-bloodcancermultiomics2017

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bloodcancermultiomics2017:<tag>

(see bioconductor-bloodcancermultiomics2017/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bloodcancermultiomics2017/README.html)