recipe bioconductor-bobafit

Refitting diploid region profiles using a clustering procedure

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/BOBaFIT.html

License:

GPL (>= 3)

Recipe:

/bioconductor-bobafit/meta.yaml

This package provides a method to refit and correct the diploid region in copy number profiles. It uses a clustering algorithm to identify pathology-specific normal (diploid) chromosomes and then use their copy number signal to refit the whole profile. The package is composed by three functions: DRrefit (the main function), ComputeNormalChromosome and PlotCluster.

package bioconductor-bobafit

(downloads) docker_bioconductor-bobafit

Versions:

1.2.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bobafit

and update with:

conda update bioconductor-bobafit

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bobafit:<tag>

(see bioconductor-bobafit/tags for valid values for <tag>)

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