- recipe bioconductor-bobafit
Refitting diploid region profiles using a clustering procedure
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/BOBaFIT.html
- License:
GPL (>= 3)
- Recipe:
This package provides a method to refit and correct the diploid region in copy number profiles. It uses a clustering algorithm to identify pathology-specific normal (diploid) chromosomes and then use their copy number signal to refit the whole profile. The package is composed by three functions: DRrefit (the main function), ComputeNormalChromosome and PlotCluster.
- package bioconductor-bobafit¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-ggbio
>=1.46.0,<1.47.0
bioconductor-plyranges
>=1.18.0,<1.19.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-bobafit
and update with:
conda update bioconductor-bobafit
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bobafit:<tag>
(see bioconductor-bobafit/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bobafit/README.html)