recipe bioconductor-borealis

Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/borealis.html

License:

GPL-3

Recipe:

/bioconductor-borealis/meta.yaml

Borealis is an R library performing outlier analysis for count-based bisulfite sequencing data. It detectes outlier methylated CpG sites from bisulfite sequencing (BS-seq). The core of Borealis is modeling Beta-Binomial distributions. This can be useful for rare disease diagnoses.

package bioconductor-borealis

Versions:

1.2.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-bsseq >=1.34.0,<1.35.0

• bioconductor-dss >=2.46.0,<2.47.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• r-base >=4.2,<4.3.0a0

• r-cowplot

• r-doparallel

• r-dplyr

• r-foreach

• r-gamlss

• r-gamlss.dist

• r-ggplot2

• r-plyr

• r-purrr

• r-r.utils

• r-rlang

• r-snow

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-borealis

and update with:

conda update bioconductor-borealis

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-borealis:<tag>

(see bioconductor-borealis/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-borealis/README.html)