recipe bioconductor-brainflowprobes

Plots and annotation for choosing BrainFlow target probe sequence

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/brainflowprobes.html

License:

Artistic-2.0

Recipe:

/bioconductor-brainflowprobes/meta.yaml

Use these functions to characterize genomic regions for BrainFlow target probe design.

package bioconductor-brainflowprobes

Versions:

1.8.0-0,  1.6.0-0,  1.4.1-0,  1.4.0-0,  1.2.0-0

Depends:

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0

• bioconductor-bumphunter >=1.36.0,<1.37.0

• bioconductor-derfinder >=1.28.0,<1.29.0

• bioconductor-derfinderplot >=1.27.0,<1.28.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-genomicstate >=0.99.0,<0.100.0

• r-base >=4.1,<4.2.0a0

• r-cowplot >=1.0.0

• r-ggplot2 >=3.1.1

• r-rcolorbrewer >=1.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-brainflowprobes

and update with:

conda update bioconductor-brainflowprobes

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-brainflowprobes:<tag>

(see bioconductor-brainflowprobes/tags for valid values for <tag>)

Download stats

Link to this page

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