recipe bioconductor-brainflowprobes

Plots and annotation for choosing BrainFlow target probe sequence

Homepage

https://bioconductor.org/packages/3.12/bioc/html/brainflowprobes.html

License

Artistic-2.0

Recipe

/bioconductor-brainflowprobes/meta.yaml

Use these functions to characterize genomic regions for BrainFlow target probe design.

package bioconductor-brainflowprobes

Versions

1.4.0-0,  1.2.0-0

Depends

• bioconductor-biostrings >=2.58.0,<2.59.0

• bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0

• bioconductor-bumphunter >=1.32.0,<1.33.0

• bioconductor-derfinder >=1.24.0,<1.25.0

• bioconductor-derfinderplot >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.42.0,<1.43.0

• bioconductor-genomicstate >=0.99.0,<0.100.0

• r-base >=4.0,<4.1.0a0

• r-cowplot >=1.0.0

• r-ggplot2 >=3.1.1

• r-rcolorbrewer >=1.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-brainflowprobes

and update with:

conda update bioconductor-brainflowprobes

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-brainflowprobes:<tag>

(see bioconductor-brainflowprobes/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-brainflowprobes/README.html)