recipe bioconductor-breakpointr

Find breakpoints in Strand-seq data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/breakpointR.html

License

file LICENSE

Recipe

/bioconductor-breakpointr/meta.yaml

This package implements functions for finding breakpoints, plotting and export of Strand-seq data.

package bioconductor-breakpointr

Versions

1.6.0-0,  1.4.0-1,  1.2.0-1,  1.0.0-1,  1.0.0-0

Depends

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-breakpointrdata >=1.6.0,<1.7.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

• r-cowplot

• r-doparallel

• r-foreach

• r-ggplot2

• r-gtools

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-breakpointr

and update with:

conda update bioconductor-breakpointr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-breakpointr:<tag>

(see bioconductor-breakpointr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-breakpointr/README.html)