recipe bioconductor-breakpointr

Find breakpoints in Strand-seq data

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/breakpointR.html

License:

file LICENSE

Recipe:

/bioconductor-breakpointr/meta.yaml

This package implements functions for finding breakpoints, plotting and export of Strand-seq data.

package bioconductor-breakpointr

Versions:

1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-1,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-breakpointrdata >=1.12.0,<1.13.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-cowplot

• r-doparallel

• r-foreach

• r-ggplot2

• r-gtools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-breakpointr

and update with:

conda update bioconductor-breakpointr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-breakpointr:<tag>

(see bioconductor-breakpointr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-breakpointr/README.html)