- recipe bioconductor-breakpointr
Find breakpoints in Strand-seq data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/breakpointR.html
- License:
file LICENSE
- Recipe:
This package implements functions for finding breakpoints, plotting and export of Strand-seq data.
- package bioconductor-breakpointr¶
-
- Versions:
1.16.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-1
,1.0.0-1
,1.16.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-1
,1.0.0-1
,1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-breakpointrdata
>=1.16.0,<1.17.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-breakpointr
and update with:
conda update bioconductor-breakpointr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-breakpointr:<tag>
(see bioconductor-breakpointr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-breakpointr/README.html)