recipe bioconductor-bridgedbr

Code for using BridgeDb identifier mapping framework from within R






Use BridgeDb functions and load identifier mapping databases in R. It uses GitHub, Zenodo, and Figshare if you use this package to download identifier mappings files.

package bioconductor-bridgedbr

(downloads) docker_bioconductor-bridgedbr



depends r-base:


depends r-curl:

depends r-rjava:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bridgedbr

and update with::

   mamba update bioconductor-bridgedbr

To create a new environment, run:

mamba create --name myenvname bioconductor-bridgedbr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-bridgedbr/tags`_ for valid values for ``<tag>``)

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