recipe bioconductor-bsgenome.cjacchus.ucsc.caljac3

Full genome sequences for Callithrix jacchus (UCSC version calJac3)

Homepage:

https://bioconductor.org/packages/3.20/data/annotation/html/BSgenome.Cjacchus.UCSC.calJac3.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.cjacchus.ucsc.caljac3/meta.yaml

Full genome sequences for Callithrix jacchus (Marmoset) as provided by UCSC (calJac3, Mar. 2009) and stored in Biostrings objects.

package bioconductor-bsgenome.cjacchus.ucsc.caljac3

(downloads) docker_bioconductor-bsgenome.cjacchus.ucsc.caljac3

versions:
1.4.2-12,  1.4.2-11,  1.4.2-10,  1.4.2-9,  1.4.2-8,  1.4.2-7,  1.4.2-6,  1.4.2-5,  1.4.2-4, 

1.4.2-12,  1.4.2-11,  1.4.2-10,  1.4.2-9,  1.4.2-8,  1.4.2-7,  1.4.2-6,  1.4.2-5,  1.4.2-4,  1.4.2-3,  1.4.2-2,  1.4.2-1

depends bioconductor-bsgenome:

>=1.74.0,<1.75.0

depends bioconductor-data-packages:

>=20241103

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bsgenome.cjacchus.ucsc.caljac3

and update with::

   mamba update bioconductor-bsgenome.cjacchus.ucsc.caljac3

To create a new environment, run:

mamba create --name myenvname bioconductor-bsgenome.cjacchus.ucsc.caljac3

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-bsgenome.cjacchus.ucsc.caljac3:<tag>

(see `bioconductor-bsgenome.cjacchus.ucsc.caljac3/tags`_ for valid values for ``<tag>``)

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