-
recipe
bioconductor-bsgenome
Software infrastructure for efficient representation of full genomes and their SNPs
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/BSgenome.html
- License
Artistic-2.0
- Recipe
- Links
biotools: bsgenome, doi: 10.1038/nmeth.3252
Infrastructure shared by all the Biostrings-based genome data packages.
-
package
bioconductor-bsgenome
¶ -
- Versions
1.58.0-0
,1.56.0-0
,1.54.0-0
,1.52.0-1
,1.52.0-0
,1.50.0-0
,1.48.0-0
,1.46.0-0
,1.44.2-0
,1.58.0-0
,1.56.0-0
,1.54.0-0
,1.52.0-1
,1.52.0-0
,1.50.0-0
,1.48.0-0
,1.46.0-0
,1.44.2-0
,1.42.0-0
,1.40.1-0
,1.38.0-0
- Depends
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-biostrings
>=2.58.0,<2.59.0
bioconductor-genomeinfodb
>=1.26.0,<1.27.0
bioconductor-genomicranges
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.24.0,<2.25.0
bioconductor-rsamtools
>=2.6.0,<2.7.0
bioconductor-rtracklayer
>=1.50.0,<1.51.0
bioconductor-s4vectors
>=0.28.0,<0.29.0
bioconductor-xvector
>=0.30.0,<0.31.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-bsgenome
and update with:
conda update bioconductor-bsgenome
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bsgenome:<tag>
(see bioconductor-bsgenome/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bsgenome/README.html)