recipe bioconductor-bsseq

A collection of tools for analyzing and visualizing bisulfite sequencing data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/bsseq.html

License

Artistic-2.0

Recipe

/bioconductor-bsseq/meta.yaml

Links

biotools: bsseq

package bioconductor-bsseq

(downloads) docker_bioconductor-bsseq

Versions

1.18.0-0, 1.16.1-0, 1.14.0-0

Depends bioconductor-beachmat

>=1.4.0,<1.5.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-bsgenome

>=1.50.0,<1.51.0

Depends bioconductor-delayedarray

>=0.8.0,<0.9.0

Depends bioconductor-delayedmatrixstats

>=1.4.0,<1.5.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-hdf5array

>=1.10.0,<1.11.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-rhdf5

>=2.26.0,<2.27.0

Depends bioconductor-rhdf5lib

>=1.4.0,<1.5.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-data.table

>=1.11.8

Depends r-gtools

Depends r-locfit

Depends r-permute

Depends r-r.utils

>=2.0.0

Depends r-rcpp

Depends r-scales

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bsseq

and update with:

conda update bioconductor-bsseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsseq:<tag>

(see bioconductor-bsseq/tags for valid values for <tag>)