-
recipe
bioconductor-bsseq¶ A collection of tools for analyzing and visualizing bisulfite sequencing data.
- Homepage
- License
Artistic-2.0
- Recipe
- Links
biotools: bsseq
-
package
bioconductor-bsseq¶ 
- Versions
1.18.0-0, 1.16.1-0, 1.14.0-0
- Depends bioconductor-beachmat
>=1.4.0,<1.5.0
- Depends bioconductor-biobase
>=2.42.0,<2.43.0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-biocparallel
>=1.16.0,<1.17.0
- Depends bioconductor-biostrings
>=2.50.0,<2.51.0
- Depends bioconductor-bsgenome
>=1.50.0,<1.51.0
- Depends bioconductor-delayedarray
>=0.8.0,<0.9.0
- Depends bioconductor-delayedmatrixstats
>=1.4.0,<1.5.0
- Depends bioconductor-genomeinfodb
>=1.18.0,<1.19.0
- Depends bioconductor-genomicranges
>=1.34.0,<1.35.0
- Depends bioconductor-hdf5array
>=1.10.0,<1.11.0
- Depends bioconductor-iranges
>=2.16.0,<2.17.0
- Depends bioconductor-limma
>=3.38.0,<3.39.0
- Depends bioconductor-rhdf5
>=2.26.0,<2.27.0
- Depends bioconductor-rhdf5lib
>=1.4.0,<1.5.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends bioconductor-summarizedexperiment
>=1.12.0,<1.13.0
- Depends libgcc-ng
>=7.3.0
- Depends libstdcxx-ng
>=7.3.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-data.table
>=1.11.8
- Depends r-gtools
- Depends r-locfit
- Depends r-permute
- Depends r-r.utils
>=2.0.0
- Depends r-rcpp
- Depends r-scales
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-bsseq
and update with:
conda update bioconductor-bsseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bsseq:<tag>
(see bioconductor-bsseq/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bsseq/README.html)