- recipe bioconductor-bsseq
Analyze, manage and store bisulfite sequencing data
- Homepage
- License
Artistic-2.0
- Recipe
- Links
biotools: bsseq
A collection of tools for analyzing and visualizing bisulfite sequencing data.
- package bioconductor-bsseq¶
-
- Versions
1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.18.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.18.0-0
,1.16.1-0
,1.14.0-0
- Depends
bioconductor-beachmat
>=2.10.0,<2.11.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-delayedmatrixstats
>=1.16.0,<1.17.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-hdf5array
>=1.22.0,<1.23.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-rhdf5
>=2.38.0,<2.39.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
r-data.table
>=1.11.8
r-r.utils
>=2.0.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-bsseq
and update with:
conda update bioconductor-bsseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bsseq:<tag>
(see bioconductor-bsseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bsseq/README.html)