recipe bioconductor-bugphyzz

A harmonized data resource and software for enrichment analysis of microbial physiologies

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/bugphyzz.html

License:

Artistic-2.0

Recipe:

/bioconductor-bugphyzz/meta.yaml

bugphyzz is an electronic database of standardized microbial annotations. It facilitates the creation of microbial signatures based on shared attributes, which are utilized for bug set enrichment analysis. The data also includes annotations imputed with ancestra state reconstruction methods.

package bioconductor-bugphyzz

(downloads) docker_bioconductor-bugphyzz

versions:

1.0.0-0

depends bioconductor-biocfilecache:

>=2.14.0,<2.15.0

depends bioconductor-data-packages:

>=20241103

depends bioconductor-s4vectors:

>=0.44.0,<0.45.0

depends curl:

depends r-base:

>=4.4,<4.5.0a0

depends r-dplyr:

depends r-httr2:

depends r-purrr:

depends r-stringr:

depends r-tidyr:

depends r-tidyselect:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bugphyzz

and update with::

   mamba update bioconductor-bugphyzz

To create a new environment, run:

mamba create --name myenvname bioconductor-bugphyzz

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-bugphyzz:<tag>

(see `bioconductor-bugphyzz/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bugphyzz/README.html)