recipe bioconductor-cafe

Chromosmal Aberrations Finder in Expression data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/CAFE.html

License

GPL-3

Recipe

/bioconductor-cafe/meta.yaml

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

package bioconductor-cafe

Versions

1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0

Depends

• bioconductor-affy >=1.72.0,<1.73.0

• bioconductor-annotate >=1.72.0,<1.73.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biovizbase >=1.42.0,<1.43.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-ggbio >=1.42.0,<1.43.0

• bioconductor-iranges >=2.28.0,<2.29.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2

• r-gridextra

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cafe

and update with:

conda update bioconductor-cafe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cafe:<tag>

(see bioconductor-cafe/tags for valid values for <tag>)

Download stats

Link to this page

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