recipe bioconductor-cafe

Chromosmal Aberrations Finder in Expression data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CAFE.html

License

GPL-3

Recipe

/bioconductor-cafe/meta.yaml

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

package bioconductor-cafe

Versions

1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0

Depends

• bioconductor-affy >=1.66.0,<1.67.0

• bioconductor-annotate >=1.66.0,<1.67.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biovizbase >=1.36.0,<1.37.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-ggbio >=1.36.0,<1.37.0

• bioconductor-iranges >=2.22.0,<2.23.0

• r-base >=4.0,<4.1.0a0

• r-ggplot2

• r-gridextra

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cafe

and update with:

conda update bioconductor-cafe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cafe:<tag>

(see bioconductor-cafe/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cafe/README.html)