- recipe bioconductor-cager
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
- Homepage:
- License:
GPL-3
- Recipe:
- Links:
biotools: cager
Preprocessing of CAGE sequencing data, identification and normalization of transcription start sites and downstream analysis of transcription start sites clusters (promoters).
- package bioconductor-cager¶
-
- Versions:
2.0.1-0
,1.34.0-0
,1.32.1-0
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.24.0-0
,1.22.3-0
,2.0.1-0
,1.34.0-0
,1.32.1-0
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.24.0-0
,1.22.3-0
,1.20.0-0
,1.18.1-0
,1.16.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-delayedmatrixstats
>=1.16.0,<1.17.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-multiassayexperiment
>=1.20.0,<1.21.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
r-ggplot2
>=2.2.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cager
and update with:
conda update bioconductor-cager
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cager:<tag>
(see bioconductor-cager/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cager/README.html)