recipe bioconductor-cancer

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/canceR.html

License:

GPL-2

Recipe:

/bioconductor-cancer/meta.yaml

The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

package bioconductor-cancer

Versions:

1.32.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-genetclassifier >=1.38.0,<1.39.0

• bioconductor-gseabase >=1.60.0,<1.61.0

• bioconductor-phenotest >=1.46.0,<1.47.0

• r-base >=4.2,<4.3.0a0

• r-circlize

• r-formula

• r-httr

• r-plyr

• r-r.methodss3

• r-r.oo

• r-rpart

• r-runit

• r-survival

• r-tkrplot

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cancer

and update with:

conda update bioconductor-cancer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cancer:<tag>

(see bioconductor-cancer/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cancer/README.html)