recipe bioconductor-categorycompare

Calculates significant annotations (categories) in each of two (or more) feature (i.e. gene) lists, determines the overlap between the annotations, and returns graphical and tabular data about the significant annotations and which combinations of feature lists the annotations were found to be significant. Interactive exploration is facilitated through the use of RCytoscape (heavily suggested).

Homepage

https://bioconductor.org/packages/3.9/bioc/html/categoryCompare.html

License

GPL-2

Recipe

/bioconductor-categorycompare/meta.yaml

package bioconductor-categorycompare

Versions

1.28.0-1, 1.26.0-0

Depends

• bioconductor-annotate >=1.62.0,<1.63.0

• bioconductor-annotationdbi >=1.46.0,<1.47.0

• bioconductor-biobase >=2.44.0,<2.45.0

• bioconductor-biocgenerics >=0.30.0,<0.31.0

• bioconductor-category >=2.50.0,<2.51.0

• bioconductor-gostats >=2.50.0,<2.51.0

• bioconductor-graph >=1.62.0,<1.63.0

• bioconductor-gseabase >=1.46.0,<1.47.0

• bioconductor-rcy3 >=2.4.0,<2.5.0

• r-base >=3.6,<3.7.0a0

• r-colorspace

• r-hwriter

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-categorycompare

and update with:

conda update bioconductor-categorycompare

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-categorycompare:<tag>

(see bioconductor-categorycompare/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-categorycompare/README.html)