recipe bioconductor-categorycompare

Meta-analysis of high-throughput experiments using feature annotations

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/categoryCompare.html

License:

GPL-2

Recipe:

/bioconductor-categorycompare/meta.yaml

Calculates significant annotations (categories) in each of two (or more) feature (i.e. gene) lists, determines the overlap between the annotations, and returns graphical and tabular data about the significant annotations and which combinations of feature lists the annotations were found to be significant. Interactive exploration is facilitated through the use of RCytoscape (heavily suggested).

package bioconductor-categorycompare

Versions:

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0

Depends:

• bioconductor-annotate >=1.76.0,<1.77.0

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-category >=2.64.0,<2.65.0

• bioconductor-gostats >=2.64.0,<2.65.0

• bioconductor-graph >=1.76.0,<1.77.0

• bioconductor-gseabase >=1.60.0,<1.61.0

• bioconductor-rcy3 >=2.18.0,<2.19.0

• cytoscape >=3.6.1

• r-base >=4.2,<4.3.0a0

• r-colorspace

• r-hwriter

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-categorycompare

and update with:

conda update bioconductor-categorycompare

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-categorycompare:<tag>

(see bioconductor-categorycompare/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-categorycompare/README.html)