- recipe bioconductor-categorycompare
Meta-analysis of high-throughput experiments using feature annotations
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/categoryCompare.html
- License:
GPL-2
- Recipe:
Calculates significant annotations (categories) in each of two (or more) feature (i.e. gene) lists, determines the overlap between the annotations, and returns graphical and tabular data about the significant annotations and which combinations of feature lists the annotations were found to be significant. Interactive exploration is facilitated through the use of RCytoscape (heavily suggested).
- package bioconductor-categorycompare¶
-
- Versions:
1.38.0-0
,1.36.0-0
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.0-0
- Depends:
bioconductor-annotate
>=1.72.0,<1.73.0
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-category
>=2.60.0,<2.61.0
bioconductor-gostats
>=2.60.0,<2.61.0
bioconductor-graph
>=1.72.0,<1.73.0
bioconductor-gseabase
>=1.56.0,<1.57.0
bioconductor-rcy3
>=2.14.0,<2.15.0
cytoscape
>=3.6.1
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-categorycompare
and update with:
conda update bioconductor-categorycompare
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-categorycompare:<tag>
(see bioconductor-categorycompare/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-categorycompare/README.html)