recipe bioconductor-cbea

Competitive Balances for Taxonomic Enrichment Analysis in R

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CBEA.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-cbea/meta.yaml

This package implements CBEA, a method to perform set-based analysis for microbiome relative abundance data. This approach constructs a competitive balance between taxa within the set and remainder taxa per sample. More details can be found in the Nguyen et al. 2021+ manuscript. Additionally, this package adds support functions to help users perform taxa-set enrichment analyses using existing gene set analysis methods. In the future we hope to also provide curated knowledge driven taxa sets.

package bioconductor-cbea

Versions:

1.2.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biocset >=1.12.0,<1.13.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-treesummarizedexperiment >=2.6.0,<2.7.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-fitdistrplus

• r-generics

• r-glue

• r-goftest

• r-lmom

• r-magrittr

• r-mixtools

• r-rcpp >=1.0.7

• r-rlang

• r-tibble

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cbea

and update with:

conda update bioconductor-cbea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cbea:<tag>

(see bioconductor-cbea/tags for valid values for <tag>)

Download stats

Link to this page

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