- recipe bioconductor-cbea
Competitive Balances for Taxonomic Enrichment Analysis in R
- Homepage:
- License:
MIT + file LICENSE
- Recipe:
This package implements CBEA, a method to perform set-based analysis for microbiome relative abundance data. This approach constructs a competitive balance between taxa within the set and remainder taxa per sample. More details can be found in the Nguyen et al. 2021+ manuscript. Additionally, this package adds support functions to help users perform taxa-set enrichment analyses using existing gene set analysis methods. In the future we hope to also provide curated knowledge driven taxa sets.
- package bioconductor-cbea¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biocset
>=1.12.0,<1.13.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-treesummarizedexperiment
>=2.6.0,<2.7.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
r-rcpp
>=1.0.7
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cbea
and update with:
conda update bioconductor-cbea
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cbea:<tag>
(see bioconductor-cbea/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cbea/README.html)