recipe bioconductor-cbioportaldata

Exposes and makes available data from the cBioPortal web resources

Homepage

https://bioconductor.org/packages/3.11/bioc/html/cBioPortalData.html

License

AGPL-3

Recipe

/bioconductor-cbioportaldata/meta.yaml

The cBioPortalData package takes compressed resources from repositories such as cBioPortal and assembles a MultiAssayExperiment object with Bioconductor classes.

package bioconductor-cbioportaldata

Versions

2.0.3-0

Depends

• bioconductor-anvil >=1.0.0,<1.1.0

• bioconductor-biocfilecache >=1.12.0,<1.13.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-multiassayexperiment >=1.14.0,<1.15.0

• bioconductor-raggedexperiment >=1.12.0,<1.13.0

• bioconductor-rtcgatoolbox >=2.18.0,<2.19.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• bioconductor-tcgautils >=1.8.0,<1.9.0

• r-base >=4.0,<4.1.0a0

• r-digest

• r-dplyr

• r-httr

• r-rappdirs

• r-readr

• r-tibble

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cbioportaldata

and update with:

conda update bioconductor-cbioportaldata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cbioportaldata:<tag>

(see bioconductor-cbioportaldata/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cbioportaldata/README.html)