- recipe bioconductor-cbioportaldata
Exposes and makes available data from the cBioPortal web resources
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/cBioPortalData.html
- License:
AGPL-3
- Recipe:
The cBioPortalData package takes compressed resources from repositories such as cBioPortal and assembles a MultiAssayExperiment object with Bioconductor classes.
- package bioconductor-cbioportaldata¶
-
- Versions:
2.6.0-0
,2.4.0-0
,2.2.8-0
,2.2.3-0
,2.0.3-0
- Depends:
bioconductor-anvil
>=1.6.0,<1.7.0
bioconductor-biocfilecache
>=2.2.0,<2.3.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-multiassayexperiment
>=1.20.0,<1.21.0
bioconductor-raggedexperiment
>=1.18.0,<1.19.0
bioconductor-rtcgatoolbox
>=2.24.0,<2.25.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-tcgautils
>=1.14.0,<1.15.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cbioportaldata
and update with:
conda update bioconductor-cbioportaldata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cbioportaldata:<tag>
(see bioconductor-cbioportaldata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cbioportaldata/README.html)