recipe bioconductor-cbioportaldata

Exposes and makes available data from the cBioPortal web resources

Homepage

https://bioconductor.org/packages/3.14/bioc/html/cBioPortalData.html

License

AGPL-3

Recipe

/bioconductor-cbioportaldata/meta.yaml

The cBioPortalData package takes compressed resources from repositories such as cBioPortal and assembles a MultiAssayExperiment object with Bioconductor classes.

package bioconductor-cbioportaldata

Versions

2.6.0-0,  2.4.0-0,  2.2.8-0,  2.2.3-0,  2.0.3-0

Depends

• bioconductor-anvil >=1.6.0,<1.7.0

• bioconductor-biocfilecache >=2.2.0,<2.3.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-multiassayexperiment >=1.20.0,<1.21.0

• bioconductor-raggedexperiment >=1.18.0,<1.19.0

• bioconductor-rtcgatoolbox >=2.24.0,<2.25.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• bioconductor-tcgautils >=1.14.0,<1.15.0

• r-base >=4.1,<4.2.0a0

• r-digest

• r-dplyr

• r-httr

• r-readr

• r-tibble

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cbioportaldata

and update with:

conda update bioconductor-cbioportaldata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cbioportaldata:<tag>

(see bioconductor-cbioportaldata/tags for valid values for <tag>)

Download stats

Link to this page

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