recipe bioconductor-cbpmanager

Generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/cbpManager.html

License:

AGPL-3 + file LICENSE

Recipe:

/bioconductor-cbpmanager/meta.yaml

This R package provides an R Shiny application that enables the user to generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics. Create cancer studies and edit its metadata. Upload mutation data of a patient that will be concatenated to the data_mutation_extended.txt file of the study. Create and edit clinical patient data, sample data, and timeline data. Create custom timeline tracks for patients.

package bioconductor-cbpmanager

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-basilisk >=1.9.0,<1.10.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-dt

• r-htmltools

• r-jsonlite

• r-magrittr

• r-markdown

• r-plyr

• r-rapportools

• r-reticulate

• r-rintrojs

• r-shiny

• r-shinybs

• r-shinycssloaders

• r-shinydashboard

• r-vroom

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cbpmanager

and update with:

conda update bioconductor-cbpmanager

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cbpmanager:<tag>

(see bioconductor-cbpmanager/tags for valid values for <tag>)

Download stats

Link to this page

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