- recipe bioconductor-cbpmanager
Generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/cbpManager.html
- License:
AGPL-3 + file LICENSE
- Recipe:
This R package provides an R Shiny application that enables the user to generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics. Create cancer studies and edit its metadata. Upload mutation data of a patient that will be concatenated to the data_mutation_extended.txt file of the study. Create and edit clinical patient data, sample data, and timeline data. Create custom timeline tracks for patients.
- package bioconductor-cbpmanager¶
-
- Versions:
1.6.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-basilisk
>=1.9.0,<1.10.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cbpmanager
and update with:
conda update bioconductor-cbpmanager
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cbpmanager:<tag>
(see bioconductor-cbpmanager/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cbpmanager/README.html)