recipe bioconductor-celaref

Single-cell RNAseq cell cluster labelling by reference

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/celaref.html

License:

GPL-3

Recipe:

/bioconductor-celaref/meta.yaml

After the clustering step of a single-cell RNAseq experiment, this package aims to suggest labels/cell types for the clusters, on the basis of similarity to a reference dataset. It requires a table of read counts per cell per gene, and a list of the cells belonging to each of the clusters, (for both test and reference data).

package bioconductor-celaref

Versions:

1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-delayedarray >=0.20.0,<0.21.0

• bioconductor-mast >=1.20.0,<1.21.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-ggplot2

• r-magrittr

• r-matrix

• r-readr

• r-rlang

• r-tibble

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-celaref

and update with:

conda update bioconductor-celaref

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-celaref:<tag>

(see bioconductor-celaref/tags for valid values for <tag>)

Download stats

Link to this page

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