- recipe bioconductor-celaref
Single-cell RNAseq cell cluster labelling by reference
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/celaref.html
- License:
GPL-3
- Recipe:
After the clustering step of a single-cell RNAseq experiment, this package aims to suggest labels/cell types for the clusters, on the basis of similarity to a reference dataset. It requires a table of read counts per cell per gene, and a list of the cells belonging to each of the clusters, (for both test and reference data).
- package bioconductor-celaref¶
-
- Versions:
1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-mast
>=1.20.0,<1.21.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-celaref
and update with:
conda update bioconductor-celaref
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-celaref:<tag>
(see bioconductor-celaref/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-celaref/README.html)