recipe bioconductor-celda

celda leverages Bayesian hierarchical modeling to cluster genes, cells, or both simultaneously from single cell sequencing data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/celda.html

License

MIT + file LICENSE

Recipe

/bioconductor-celda/meta.yaml

package bioconductor-celda

Versions

1.0.4-0

Depends

• bioconductor-mast >=1.10.0,<1.11.0

• bioconductor-s4vectors >=0.22.0,<0.23.0

• bioconductor-summarizedexperiment >=1.14.0,<1.15.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-data.table

• r-digest

• r-doparallel

• r-enrichr

• r-foreach

• r-ggplot2

• r-ggrepel

• r-gridextra

• r-gtable

• r-matrixstats

• r-mcmcprecision

• r-plyr

• r-rcolorbrewer

• r-rcpp

• r-rcppeigen

• r-reshape2

• r-rtsne

• r-scales

• r-stringi

• r-umap

• r-withr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-celda

and update with:

conda update bioconductor-celda

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-celda:<tag>

(see bioconductor-celda/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-celda/README.html)