recipe bioconductor-celda

CEllular Latent Dirichlet Allocation

Homepage

https://bioconductor.org/packages/3.11/bioc/html/celda.html

License

MIT + file LICENSE

Recipe

/bioconductor-celda/meta.yaml

Utilizing Bayesian hierarchical models to analyze single-cell genomic data.

package bioconductor-celda

Versions

1.4.5-0,  1.2.0-0,  1.0.4-0

Depends

• bioconductor-delayedarray >=0.14.0,<0.15.0

• bioconductor-mast >=1.14.0,<1.15.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-scater >=1.16.0,<1.17.0

• bioconductor-scran >=1.16.0,<1.17.0

• bioconductor-singlecellexperiment >=1.10.0,<1.11.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.5.0

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-dbscan

• r-dendextend

• r-digest

• r-doparallel

• r-enrichr

• r-foreach

• r-ggdendro

• r-ggplot2

• r-ggrepel

• r-gridextra

• r-gtable

• r-matrix

• r-matrixstats

• r-mcmcprecision

• r-plyr

• r-proc

• r-rcolorbrewer

• r-rcpp

• r-rcppeigen

• r-reshape2

• r-rtsne

• r-scales

• r-seurat

• r-stringi

• r-stringr

• r-uwot

• r-withr

Required By

• bioconductor-singlecelltk

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-celda

and update with:

conda update bioconductor-celda

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-celda:<tag>

(see bioconductor-celda/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-celda/README.html)