recipe bioconductor-celda

CEllular Latent Dirichlet Allocation

Homepage

https://bioconductor.org/packages/3.14/bioc/html/celda.html

License

MIT + file LICENSE

Recipe

/bioconductor-celda/meta.yaml

Celda is a suite of Bayesian hierarchical models for clustering single-cell RNA-sequencing (scRNA-seq) data. It is able to perform "bi-clustering" and simultaneously cluster genes into gene modules and cells into cell subpopulations. It also contains DecontX, a novel Bayesian method to computationally estimate and remove RNA contamination in individual cells without empty droplet information. A variety of scRNA-seq data visualization functions is also included.

package bioconductor-celda

(downloads) docker_bioconductor-celda

Versions

1.10.0-11.10.0-01.8.1-01.6.1-11.6.1-01.4.5-01.2.0-01.0.4-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-celda

and update with:

conda update bioconductor-celda

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-celda:<tag>

(see bioconductor-celda/tags for valid values for <tag>)

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