- recipe bioconductor-cellbarcode
Cellular DNA Barcode Analysis toolkit
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/CellBarcode.html
- License:
MIT + file LICENSE
- Recipe:
This package performs Cellular DNA Barcode (genetic lineage tracing) analysis. The package can handle all kinds of DNA barcodes, as long as the barcode within a single sequencing read and has a pattern which can be matched by a regular expression. This package can handle barcode with flexible length, with or without UMI (unique molecular identifier). This tool also can be used for pre-processing of some amplicon data such as CRISPR gRNA screening, immune repertoire sequencing and meta genome data.
- package bioconductor-cellbarcode¶
-
- Versions:
1.0.0-1
,1.0.0-0
- Depends:
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-shortread
>=1.52.0,<1.53.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
r-data.table
>=1.12.6
r-rcpp
>=1.0.5
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cellbarcode
and update with:
conda update bioconductor-cellbarcode
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cellbarcode:<tag>
(see bioconductor-cellbarcode/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cellbarcode/README.html)