recipe bioconductor-cellbaser

Querying annotation data from the high performance Cellbase web

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/cellbaseR.html

License:

Apache License (== 2.0)

Recipe:

/bioconductor-cellbaser/meta.yaml

This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.

package bioconductor-cellbaser

Versions:

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-doparallel

• r-foreach

• r-httr

• r-jsonlite

• r-pbapply

• r-r.utils

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cellbaser

and update with:

conda update bioconductor-cellbaser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cellbaser:<tag>

(see bioconductor-cellbaser/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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