-
recipe
bioconductor-cellbench
Construct Benchmarks for Single Cell Analysis Methods
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/CellBench.html
- License
GPL-3
- Recipe
This package contains infrastructure for benchmarking analysis methods and access to single cell mixture benchmarking data. It provides a framework for organising analysis methods and testing combinations of methods in a pipeline without explicitly laying out each combination. It also provides utilities for sampling and filtering SingleCellExperiment objects, constructing lists of functions with varying parameters, and multithreaded evaluation of analysis methods.
-
package
bioconductor-cellbench
¶ -
- Versions
1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends
bioconductor-biocfilecache
>=1.14.0,<1.15.0
bioconductor-biocparallel
>=1.24.0,<1.25.0
bioconductor-singlecellexperiment
>=1.12.0,<1.13.0
r-base
>=4.0,<4.1.0a0
r-purrr
>=0.3.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cellbench
and update with:
conda update bioconductor-cellbench
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cellbench:<tag>
(see bioconductor-cellbench/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cellbench/README.html)