recipe bioconductor-cellbench

Construct Benchmarks for Single Cell Analysis Methods

Homepage

https://bioconductor.org/packages/3.10/bioc/html/CellBench.html

License

GPL-3

Recipe

/bioconductor-cellbench/meta.yaml

This package contains infrastructure for benchmarking analysis methods and access to single cell mixture benchmarking data. It provides a framework for organising analysis methods and testing combinations of methods in a pipeline without explicitly laying out each combination. It also provides utilities for sampling and filtering SingleCellExperiment objects, constructing lists of functions with varying parameters, and multithreaded evaluation of analysis methods.

package bioconductor-cellbench

Versions

1.2.0-0, 1.0.0-1

Depends

• bioconductor-biocfilecache >=1.10.0,<1.11.0

• bioconductor-biocparallel >=1.20.0,<1.21.0

• bioconductor-singlecellexperiment >=1.8.0,<1.9.0

• r-base >=3.6,<3.7.0a0

• r-dplyr

• r-glue

• r-lubridate

• r-magrittr

• r-memoise

• r-purrr >=0.3.0

• r-rappdirs

• r-rlang

• r-tibble

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cellbench

and update with:

conda update bioconductor-cellbench

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cellbench:<tag>

(see bioconductor-cellbench/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cellbench/README.html)