- recipe bioconductor-celldex
Reference Index for Cell Types
- Homepage
https://bioconductor.org/packages/3.14/data/experiment/html/celldex.html
- License
GPL-3
- Recipe
Provides a collection of reference expression datasets with curated cell type labels, for use in procedures like automated annotation of single-cell data or deconvolution of bulk RNA-seq.
- package bioconductor-celldex¶
-
- Versions
1.4.0-0
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-annotationhub
>=3.2.0,<3.3.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-delayedmatrixstats
>=1.16.0,<1.17.0
bioconductor-experimenthub
>=2.2.0,<2.3.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-celldex
and update with:
conda update bioconductor-celldex
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-celldex:<tag>
(see bioconductor-celldex/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-celldex/README.html)