recipe bioconductor-celldex

Reference Index for Cell Types

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/celldex.html

License

GPL-3

Recipe

/bioconductor-celldex/meta.yaml

Provides a collection of reference expression datasets with curated cell type labels, for use in procedures like automated annotation of single-cell data or deconvolution of bulk RNA-seq.

package bioconductor-celldex

Versions

1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-delayedarray >=0.20.0,<0.21.0

• bioconductor-delayedmatrixstats >=1.16.0,<1.17.0

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-singlecelltk

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-celldex

and update with:

conda update bioconductor-celldex

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-celldex:<tag>

(see bioconductor-celldex/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-celldex/README.html)