- recipe bioconductor-cellhts2
Analysis of cell-based screens - revised version of cellHTS
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/cellHTS2.html
- License:
Artistic-2.0
- Recipe:
This package provides tools for the analysis of high-throughput assays that were performed in microtitre plate formats (including but not limited to 384-well plates). The functionality includes data import and management, normalisation, quality assessment, replicate summarisation and statistical scoring. A webpage that provides a detailed graphical overview over the data and analysis results is produced. In our work, we have applied the package to RNAi screens on fly and human cells, and for screens of yeast libraries. See ?cellHTS2 for a brief introduction.
- package bioconductor-cellhts2¶
-
- Versions:
2.62.0-0
,2.58.0-0
,2.56.0-0
,2.52.0-0
,2.50.0-0
,2.48.0-1
,2.46.0-0
,2.44.0-0
,2.42.0-0
,2.62.0-0
,2.58.0-0
,2.56.0-0
,2.52.0-0
,2.50.0-0
,2.48.0-1
,2.46.0-0
,2.44.0-0
,2.42.0-0
,2.40.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-category
>=2.64.0,<2.65.0
bioconductor-genefilter
>=1.80.0,<1.81.0
bioconductor-gseabase
>=1.60.0,<1.61.0
bioconductor-splots
>=1.64.0,<1.65.0
bioconductor-vsn
>=3.66.0,<3.67.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cellhts2
and update with:
conda update bioconductor-cellhts2
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cellhts2:<tag>
(see bioconductor-cellhts2/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cellhts2/README.html)